Pumpkin Cream Cheese Muffins

Featured in: Sweet Slow Moments

These moist pumpkin muffins are layered with a luscious cream cheese filling, creating a delightful contrast of spiced batter and creamy center. Cinnamon, nutmeg, cloves, and ginger provide warming fall flavors, while pumpkin purée keeps each bite tender. Optional pumpkin seeds or pecans add crunch on top. Quick and easy to prepare, these treats are perfect for casual breakfasts, afternoon snacks, or seasonal gatherings. Serve with chai or spiced tea for extra comfort on chilly days. Store in the fridge to keep fresh, and enjoy the melt-in-your-mouth texture with every bite.

Updated on Sun, 26 Oct 2025 12:30:35 GMT
Golden-brown Pumpkin Cream Cheese Muffins, baked to perfection and ready to enjoy. Save
Golden-brown Pumpkin Cream Cheese Muffins, baked to perfection and ready to enjoy. | meanwhilerecipe.com

Pumpkin Cream Cheese Muffins wrap every cozy autumn wish into one bite Moist spiced pumpkin muffin batter hugs a sweet creamy center and every taste makes chilly mornings feel special or turns the afternoon coffee into a little celebration

I first baked these when a friend came over after apple picking Pumpkin and cream cheese together remind me of the fancy bakery in town but these are even softer

Ingredients

  • Cream cheese: Use full fat for the richest center Let it soften fully so you can whip up a smooth filling
  • Granulated sugar: Gives balanced sweetness in both the muffin and the filling Make sure it is fresh and not clumpy
  • Vanilla extract: Brings depth to both the filling and batter Pure vanilla tastes best for that bakery like aroma
  • All purpose flour: Standard for these muffins Make sure it is fresh and measure by fluffing then spooning into your cup for the lightest texture
  • Baking soda: Helps muffins rise tall and fluffy
  • Baking powder: Adds extra lift for a soft crumb
  • Salt: Balances the sweetness and heightens all the spice
  • Ground cinnamon: Classic pumpkin spice warmth Use Saigon cinnamon if you like strong flavor
  • Ground nutmeg: A little goes a long way Freshly grated is even more fragrant
  • Ground cloves: Small amount but essential for that autumn spice profile
  • Ground ginger: Adds zip and brightness Dried is fine or try a bit of grated fresh ginger
  • Canned pumpkin purée: Select pure pumpkin not pie filling for best taste and color
  • Vegetable oil: Keeps the muffins tender and moist Use neutral oil like sunflower or canola
  • Brown sugar: Packed tight for rich molasses sweetness
  • Large eggs: Bind everything nicely Room temperature eggs mix in more evenly
  • Optional Pumpkin seeds or chopped pecans: Offer crunch and decorative flair Use fresh pepitas for extra nuttiness

Instructions

Prepare The Cream Cheese Filling:
Combine softened cream cheese granulated sugar and vanilla in a medium bowl Beat until perfectly smooth and creamy with no lumps Set aside and let it come to a slightly cool room temperature so it is easier to scoop later
Mix The Dry Ingredients:
Whisk together flour baking soda baking powder salt cinnamon nutmeg cloves and ginger in a large bowl Thorough blending ensures spices are evenly distributed in every bite
Whisk The Wet Ingredients:
In another bowl whisk pumpkin purée oil brown sugar granulated sugar eggs and vanilla until everything is well combined and smooth Make sure to break up any brown sugar clumps for even sweetness
Combine Wet And Dry Mixtures:
Pour wet ingredients into dry mixture Gently fold everything together just until no flour streaks remain Keep a light hand so the muffins stay tender and avoid overmixing which can make them tough
Layer The Muffin Batter:
Spoon about two tablespoons of pumpkin batter into each lined or greased muffin cup Make sure the bottom is fully covered for easy assembly
Add The Cream Cheese Center:
Drop a heaping teaspoon of your cream cheese filling into the middle of each muffin cup Gently push it down so it sits in the center but not all the way to the bottom
Cover With More Pumpkin Batter:
Spoon remaining pumpkin batter over each mound of cream cheese Aim to seal the filling inside but do not worry if some peeks out This guarantees every muffin has that surprise bite
Top And Decorate:
Sprinkle each muffin with pumpkin seeds or chopped pecans if you love extra crunch This step is pretty and adds a subtle nutty note
Bake To Perfection:
Place muffin tin in preheated oven at 180C Bake for twenty to twenty two minutes Muffins should be set and a toothpick poked into the muffin part comes out mostly clean Do not test through the cream cheese center as it will stay soft
Cool And Enjoy:
Let muffins cool in their pan for ten minutes to finish setting Then transfer to a wire rack to cool fully before eating or storing
Soft and fluffy Pumpkin Cream Cheese Muffins with a sweet and tangy center. Save
Soft and fluffy Pumpkin Cream Cheese Muffins with a sweet and tangy center. | meanwhilerecipe.com

The canned pumpkin always takes me back to the smell of muffins baking at my grandmother’s house The cream cheese swirl is my daughter’s favorite part and the creamy pockets make every batch feel special

Storage Tips

Store any extra muffins in an airtight container in the fridge They stay wonderfully moist for up to four days Let them sit on the counter for ten to fifteen minutes before serving so the cream cheese returns to that soft bakery style texture

Ingredient Substitutions

Swap the vegetable oil for melted coconut oil if you like a hint of coconut flavor If you need gluten free use a measure for measure gluten free flour blend For a dairy free version use vegan cream cheese and be sure to double check all labels

Serving Suggestions

These muffins feel right for breakfast with a mug of hot coffee or tea Pair with a chai latte or a cozy spiced herbal tea For dessert I sometimes dust with powdered sugar or add an extra dollop of whipped cream

Cultural And Seasonal Notes

Pumpkin muffins trace their roots to classic American autumn baking When the leaves start to turn and pumpkins crowd the farmers markets these become a staple in many kitchens This style of muffin became wildly popular in American coffee shops in the 1990s

Seasonal Adaptations

Use roasted sweet potato purée for a fun winter twist Top with dried cranberries for a festive holiday look Sprinkle with extra cinnamon sugar for a crunchy fall topping

Success Stories

Readers have messaged me that these muffins made their Thanksgiving mornings brighter One friend brings them to Halloween brunch every year The cream cheese always gets rave reviews

Freezer Meal Conversion

Let the muffins cool completely then wrap each one in plastic wrap and seal in a freezer bag Freeze for up to two months Thaw overnight in the fridge or pop in the microwave for quick breakfast bliss

Homemade Pumpkin Cream Cheese Muffins—a spiced, comforting treat for cool autumn days. Save
Homemade Pumpkin Cream Cheese Muffins—a spiced, comforting treat for cool autumn days. | meanwhilerecipe.com

Serve these with hot drinks or as a festive autumn dessert They are perfect for sharing and sure to brighten your morning or holiday table

Recipe FAQ

Can I use homemade pumpkin purée?

Yes, homemade pumpkin purée works well if it is thick and drained of excess moisture for best texture.

How do I prevent cream cheese from leaking out?

Completely cover the cream cheese center with batter and avoid overfilling cups to keep it inside.

Can I substitute nuts for the topping?

Pepitas or chopped pecans both work; you can also use walnuts or omit the topping entirely.

Is it possible to make these muffins gluten-free?

Yes, simply replace all-purpose flour with your preferred gluten-free flour blend for similar results.

How should I store the muffins?

Keep muffins refrigerated for up to four days. For best taste, bring to room temperature before serving.

What can I add for extra flavor?

Mini chocolate chips or dried cranberries can be mixed into the batter for a different twist.

Pumpkin Cream Cheese Muffins

Pumpkin muffins with spiced batter and creamy center, perfect for fall mornings or as a comforting dessert.

Time to Prepare
20 mins
Time to Cook
22 mins
Complete Time
42 mins
Created by Meanwhilerecipe Clara Bennett

Recipe Category Sweet Slow Moments

Skill Level Easy

Cuisine Type American

Makes 12 Number of Servings

Diet Considerations Vegetarian-Friendly

Ingredient List

Cream Cheese Filling

01 4 oz cream cheese, softened
02 1/4 cup granulated sugar
03 1/2 teaspoon vanilla extract

Pumpkin Muffin Batter

01 1 3/4 cups all-purpose flour
02 1 teaspoon baking soda
03 1/2 teaspoon baking powder
04 1/2 teaspoon salt
05 1 1/2 teaspoons ground cinnamon
06 1/2 teaspoon ground nutmeg
07 1/4 teaspoon ground cloves
08 1/4 teaspoon ground ginger
09 1 cup canned pumpkin purée
10 1/2 cup vegetable oil
11 1/2 cup brown sugar, packed
12 1/4 cup granulated sugar
13 2 large eggs
14 1 teaspoon vanilla extract

Optional Topping

01 2 tablespoons pumpkin seeds (pepitas) or chopped pecans

Steps

Step 01

Prepare Muffin Tin: Preheat oven to 350°F (180°C). Line a 12-cup muffin tin with paper liners or grease lightly.

Step 02

Mix Cream Cheese Filling: Combine softened cream cheese, granulated sugar, and vanilla extract in a medium bowl. Beat until smooth and creamy. Set aside.

Step 03

Combine Dry Ingredients: Whisk together flour, baking soda, baking powder, salt, cinnamon, nutmeg, cloves, and ginger in a large mixing bowl.

Step 04

Blend Wet Ingredients: In a separate bowl, whisk pumpkin purée, vegetable oil, brown sugar, granulated sugar, eggs, and vanilla extract until well combined.

Step 05

Mix Muffin Batter: Add the wet mixture to the dry ingredients and stir gently just until incorporated. Do not overmix.

Step 06

Fill Muffin Cups: Spoon about 2 tablespoons of batter into each prepared muffin cup.

Step 07

Add Filling: Place 1 heaping teaspoon of cream cheese filling into the center of each muffin cup and press down gently.

Step 08

Cover Filling: Top with remaining pumpkin batter, ensuring the cream cheese is fully covered.

Step 09

Add Topping: Sprinkle pumpkin seeds or pecans over each muffin, if desired.

Step 10

Bake: Bake for 20–22 minutes until muffins are set and a toothpick inserted into the muffin (outside the center) comes out clean.

Step 11

Cool: Let muffins cool in the tin for 10 minutes; transfer to a wire rack to cool completely before serving.

Tools Needed

  • 12-cup muffin tin
  • Mixing bowls
  • Electric mixer or whisk
  • Measuring cups and spoons
  • Spatula

Allergy Notes

Examine all food items for allergens and consult your doctor for concerns.
  • Contains wheat (gluten), eggs, and dairy (cream cheese).
  • If topping with nuts, contains tree nuts.
  • Confirm ingredient labels for hidden allergens.

Nutrition Info (per portion)

These details are meant for reference, not as a substitute for medical guidance.
  • Energy (Calories): 235
  • Fats: 11 g
  • Carbohydrates: 30 g
  • Proteins: 4 g